Run something(vbs, application or package) with login account, after finishing the application installation with system account

There are some laptops use EFS to encrypt userprofile. they use software center to install some application（install with system, their user account  don't have admin right, it is application, not package).

We found they met some problems when first opened these application. The root cause is the application can't access the folder under %userprofile%\AppData\Local（the %userprofile%\AppData\Local is encryption), Because of the security policy, it need to be encryption, but we can decrypt the folder under %userprofile%\AppData\Local.

Here is where our question comes,  EFS decryption need to use user account, but software installation need to use system account. so the install script will fail to decrypt the folder.

so I want to know if we have some way to run something(vbs, application or package) with login account, after finishing the application installation with system account?  I need to take effect immediately.

Thanks